Formats understood by GONOME |
| GONOME can process positions in a number of commonly available formats. |
1. BLAST output can be imported if in XML format.
A walkthrough of how to do this is available here. |
| The links below will take you to NCBI BLAST query pages with the appropriate parameters set. |
| A.thaliana C.elegans H.sapiens S.pombe S.cerevisiae M.musculus D.melanogaster |
2. Standard GFF format as per Sanger definition.
|
3. PSL and BED formats are as per UCSC definition.
|
4. Positions format is GONOME's internal positions format, and takes the form :
ContigID or chromosome number, whitespace seperator, position in contig/chromosome, and optionally whitespace seperator, strand (W and C notation, or 1 for watson strand and 0 or -1 for crick) |
e.g. 'NT_004487 27226701 -1' or 'Chromosome5 234101 C' , one position per line.
Note, GONOME does not currently handle unicode input, ASCII only please. |
